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NCBI (BLAST, PubMed, Entrez)
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Plant Genomes |
Arkady Khodursky, Univ. Minnesota |
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[BLAST
Search Advanced Options: -e 100 000 -w7] |
Arabidopsis Genome
Chlamydomonas
Duke University site |
David Botstein, Stanford
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SeqWeb
GCG -
Very
powerful database search. Contact
Kevin Nicollelis to get an account. |
Cotton Genome
USDA/Texas A&M cotton genome database |
Erin O'Shea, UCSF
|
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TIGR
Institute for Genome Research site containing links to 31 completed
genomes and over 100 in-progress genomes. |
Maize Genome
The USDA/U. of Missouri Maize genome data
base |
Ira Herskowitz, UCSF
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MOTIF:
Searching Protein and Nucleic Acid Sequence Motifs |
Rice Genome
Cornell University rice genome project
data base |
Jonathan Eisen, TIGR |
|
The Genetic Codes -Compiled
by Andrzej (Anjay) Elzanowski and Jim Ostell (NCBI), Bethesda, MD |
Soybean Genome
main page of SOYBASE, the general soybean
genome information center |
Mike Eisen, LBL |
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Brutlag Motif Tools
|
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Pat Brown, Stanford
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Genolevures Yeast Database
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Insects |
Pradip Rathod, Univ. Washington |
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PlasmoDB
|
Drosphila Genome
-
The University of Indiana FLYBASE Drosophila genome project data
base |
Vishy Iyer, UT Austin |
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Online Mendelian Inheritance in Man
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Drosophilia Resources
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Online Molecular Biology Resources
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Fungi
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Prokaryotes
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Candida albicans Genome
The
University of Minnesota C.albicans genome project site |
Borrelia Data Base
|
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Saccharomyces Genome
Database -
The
Stanford University Saccharomyces genome project |
E. Coli Genetic Encyclopedia
|
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Yeast resources
|
E. Coli Genome
University of Miami E.coli genome data
base |
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Yeast Proteome Database
|
Malaria Data Base
Australian Malaria information data base.
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MIPS Yeast Database
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Malaria Resources (MR4)
|
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Human Genome Project
|
Malaria Transcriptome Database
|
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Human
Genome Project
Main Page |
Microbial Genomes (general)
general site in Lyon, France
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Calendar of Genetics Meetings
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PathoGene
-
A CDS Finding and Primer Design Tool for Microobes |
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The Human Genome Database
-
searchable data base |
TIGR Microbial Genomes |
|
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dbEST
- searchable more than 3
million ESTs |
Treponema Data Base
[See also: TIGR site. ] |
|
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Human Mitochondrial Genome
-
Emory University site |
Nematode Genome
"Worm base" C.elegans genome data base |
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MAGPIE
The Magpie Automated Genome Project
Investigation Environment |
Protein Databases |
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National Center for Genome Resources
Santa Fe,
New Mexico based bioinformatics site |
Brookhaven National Laboratory Protein
Databank
|
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SNP Consortium Database
Sponsored by Cold Spring Harbor, with more
than 100,000 human SN-polymorphisms. |
Protein Database
Searchable UK InterPro site with links to
all protein data bases and analysis sites |
|
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SNP Database
Continually updated NIH site covering more
than 25,000 SNPs |
Swiss Prot
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Mouse/Rat Genome
|
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Jackson Labs - Mouse Genome
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Rat Genome
- JAX Bioinformatics Group
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Other Vertebrates
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Dog Genome
The main site of the UC-Berkeley canine
genome project |
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Horse Genomics
Iowa State University site |
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Livestock (general)
Iowa State University site |
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Zebra Fish Genome
U. of Oregon zebrafish genome project
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Xenopus
Home page |
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